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Python

R

Git

Bash

Unix/Linux

HPC (SGE)



Experienced in computational bioinformatics and biostatistics applied for next-generation sequencing data integrated to other omics analysis, especially for microbiome study.

Disclaimer

This resume was made with the R package pagedown.

Source code available at: github.com/erawijantari/cv.

Last updated on 2019-12-22.

Main

Pande Putu Erawijantari

Interested in applying bioinformatics analysis on the complex multi-omics data such as metagenomic, metabolomic, and metatranscriptomic. Current research mainly focus on the dynamics of human gut microbiome in the gastrointestinal-related diseases and its association to treatment effectiveness.

Education

PhD Candidate-Life Science and Technology

Tokyo Institute of Technology

Tokyo JP

Present - 2017

  • Research project: Multi-omics analysis gut microbiome
  • Skills learned: Multi-omics integration, Biostatistic, Machine learning

M.Sc-Biological Information

Tokyo Institute of Technology

Tokyo JP

2017 - 2015

  • Research project: Gut microbiome in gastrointestinal related diseases",Skills learned: Metagenomics analysis pipeline, Biostatistic

B.Sc-Biology

Institut Teknologi Bandung

Bandung ID

2014 - 2010

  • Research project: Gene mutagenesis isolated from deep sea metagenome
  • Skills learned: Site-directed mutagenesis, Genetic engineering, Protein expression, Enzyme kinetic

Selected Publications

Influence of gastrectomy for gastric cancer treatment on faecal microbiome and metabolome profiles

Erawijantari PP, Mizutani S, Shiroma H, Shiba S, Nakajima T, Sakamoto T, Saito Y, Fukuda S , Yachida S, Yamada T. Gut. In-press.

N/A

2019

Anti-inflammatory effect of mangosteen (Garcinia mangostana L.) peel extract and its compounds in LPS-induced RAW264.7 cell

Widowati W, Darsono L, Suherman J, Fauziah N, Maesaroh M, Erawijantari PP. Nat Prod Sci 22(3):147-153.

N/A

2016

In vitro study of Myristica fragrans seed (Nutmeg) ethanolic extract and quercetin compound as anti-inflammatory agent

Dewi K, Widyarto B, Erawijantari PP, Widowati W. Int J Res Med Sci 3 (9), 2303-2310.

N/A

2015

Selected conferences

Fecal microbiome and metabolome characterizations of patients after gastrectomy for gastric cancer treatment

Erawijantari PP, Mizutani S, Shiroma H, Yachida S, Yamada T. Keystone Symposia on Molecular and Cellular Biology: Microbiome: Therapeutic Implications (T1).Poster.

N/A

October, 2019

Metagenomic and metabolomic profiling to characterize the effect of gastrectomy as gastric cancer treatment on human gut microbiome

Erawijantari PP, Mizutani S, Shiroma H, Yachida S, Yamada T. 7th International Human Microbiome Consortium : Translating microbiome science. Poster.

N/A

June, 2018

  • Selected as Early Career Scientist Bursary Recipient

Teaching Experiences

I am passionate about teaching because I always learn something new from it. Designing the course and effective teaching approach are very challenging process that I mostly enjoyed.

Initiator and Tutor for RPyID Session

Local community of Indonesian in Tokyo Institute of Technology

Tokyo JP

Present - 2019

  • Introductions of R and Python for data analysis
  • Designing the biweekly meeting course and discussion
  • Sites: RPyID-GitHub

Teaching Asistant-International Bio-Creative Design

School of Life Science and Technology, Tokyo Tech

Tokyo JP

2018

Research Asistant-LST Bioleader Training 1

School of Life Science and Technology, Tokyo Tech

Tokyo JP

2017

Selected awards

Japanese Government (Monbukagakusho:MEXT) Scholarship recipient

Awarded to foreign students who study in higher education institutions, selected on the recommendation of Japanese Embassy/Consulate General, University, or Authority.

N/A

2020 - 2015

International Human Microbiome Consortium 2018 Early Career Scientist Bursary Recipient

Conference travel grant available to 12 scientists works on human microbiome research.

N/A

2018

Gold medalist as ITB_Indonesia team on iGEM (International Genetically Engineered Machine)

The project title: Ecoliplaster :cell biocatalyst for PET plastic degradation using E. coli.

N/A

2014

Work experiences

REFERENCE

TAKUJI YAMADA
Associate Professor
School of Life Science and Technology
Tokyo Institute of Technology, Tokyo, JP
+813-5734-3629,

Student Intern-Data Analyst

Metabologenomics, Inc.

Tokyo JP

Present - 2018

  • Contribute as data analyst and metagenomic pipeline development

Research Assistant

Yamada Laboratory-Tokyo Institute of Technology

Tokyo JP

Present - 2017

  • Primarly working on the gut microbiome and metabolome profiling for gastrectomy patients
  • Contribute to data analysis on hereditary colorectal cancer project
  • Contribute to the methods development for the eukaryotic fraction detection and metagenomics analysis pipeline

Research Scientist

Biomolecular and Biomedical Research Center, Aretha Medika Utama

Bandung ID

2015 - 2014

  • Carried out analyses on the phytochemical bioactive screening and the potential of Mesenchymal Stem Cells for cancer treatment using human cells line model